Mohammed Alshalalfa: search on Z-Library

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1

Prostate Cancer Genomic-risk Differences Between African-American and White Men Across Gleason Scores

Mahal, Brandon A., Alshalalfa, Mohammed, Spratt, Daniel E., Davicioni, Elai, Zhao, Shuang G., Feng, Felix Y., Rebbeck, Timothy R., Nguyen, Paul L., Huang, Franklin W.

Journal:

European Urology

Year:

2019

File:

PDF, 278 KB

2019

2

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Philadelphia, PA, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine - Integrating protein networks for identifying cooperative miRNA activity in disease gene signatures

Alshalalfa, Mohammed, Alhajj, Reda

Year:

2012

Language:

english

File:

PDF, 602 KB

english, 2012

3

ING3 is associated with increased cell invasion and lethal outcome in ERG-negative prostate cancer patients

Almami, Amal, Hegazy, Samar A., Nabbi, Arash, Alshalalfa, Mohammed, Salman, Asma, Abou-Ouf, Hatem, Riabowol, Karl, Bismar, Tarek A.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.84 MB

english, 2016

4

Efficient Periodicity Mining in Time Series Databases Using Suffix Trees

Rasheed, Faras, Alshalalfa, Mohammed, Alhajj, Reda

Journal:

IEEE Transactions on Knowledge and Data Engineering

Year:

2011

Language:

english

File:

PDF, 2.15 MB

english, 2011

5

MP55-18 RACE IMPACTS ETS FAMILY TRANSCRIPTION FACTOR EXPRESSION IN PROSTATE CANCER: DATA FROM A MULTI-INSTITUTIONAL COHORT

Faisal, Farzana, Sundi, Debasish, Ross, Ashley, Klein, Eric, Den, Robert, Dicker, Adam, Choeurng, Voleak, Erho, Nicholas, Alshalalfa, Mohammed, Davicioni, Elai, Lotan, Tamara, Schaeffer, Edward

Journal:

The Journal of Urology

Year:

2015

Language:

english

File:

PDF, 284 KB

english, 2015

6

Discovering cancer biomarkers: from DNA to communities of genes

Alshalalfa, Mohammed, Ozyer, Tansel, Alhajj, Reda, Rokne, Jon

Journal:

International Journal of Networking and Virtual Organisations

Year:

2011

Language:

english

File:

PDF, 428 KB

english, 2011

7

Gene expression signatures of neuroendocrine prostate cancer and primary small cell prostatic carcinoma

Tsai, Harrison K., Lehrer, Jonathan, Alshalalfa, Mohammed, Erho, Nicholas, Davicioni, Elai, Lotan, Tamara L.

Journal:

Year:

2017

Language:

english

File:

PDF, 2.61 MB

english, 2017

8

MP02-06 EVALUATION OF A GENOMIC CLASSIFIER IN RADICAL PROSTATECTOMY PATIENTS WITH LYMPH NODE METASTASIS

Lee, Hak J., Yousefi, Kasra, Haddad, Zaid, Abdollah, Firas, Lam, Lucia, Shin, Heesun, Alshalalfa, Mohammed, Godebu, Elana, Wang, Song, Shabaik, Ahmed, Davicioni, Elai, Kane, Christopher

Journal:

The Journal of Urology

Year:

2016

Language:

english

File:

PDF, 40 KB

english, 2016

9

Novel RB1-loss transcriptomic signature is associated with poor clinical outcomes across cancer types

Chen, William S, Alshalalfa, Mohammed, . Zhao, Shuang G, Liu, Yang, Mahal, Brandon A, Quigley, David A, Wei, Ting, Davicioni, Elai, Rebbeck, Timothy R., Kantoff, Philip W., Maher, Christopher A, Knuds

Journal:

Clinical Cancer Research

Year:

2019

Language:

english

File:

PDF, 8.99 MB

english, 2019

10

Transcriptomic Heterogeneity of Gleason Grade Group 5 Prostate Cancer

Kishan, Amar U., Romero, Tahmineh, Alshalalfa, Mohammed, Liu, Yang, Tran, Phuoc T., Nickols, Nicholas G., Ye, Huihui, Sajed, Dipti, Rettig, Matthew B., Reiter, Robert E., Garraway, Isla P., Spratt, Da

Journal:

European Urology

Year:

2020

File:

PDF, 1.53 MB

2020

11

Distinct transcriptional repertoire of the androgen receptor in ETS fusion-negative prostate cancer

Berglund, Anders E., Rounbehler, Robert J., Gerke, Travis, Awasthi, Shivanshu, Cheng, Chia-Ho, Takhar, Mandeep, Davicioni, Elai, Alshalalfa, Mohammed, Erho, Nicholas, Klein, Eric A., Freedland, Stephe

Journal:

Prostate Cancer and Prostatic Diseases

Year:

2018

Language:

english

File:

PDF, 11.52 MB

english, 2018

12

The lncRNAs PCGEM1 and PRNCR1 are not implicated in castration resistant prostate cancer

Prensner, John R., Sahu, Anirban, Iyer, Matthew K., Malik, Rohit, Chandler, Benjamin, Asangani, Irfan A., Poliakov, Anton, Vergara, Ismael A., Alshalalfa, Mohammed, Jenkins, Robert B., Davicioni, Elai

Journal:

Year:

2014

Language:

english

File:

PDF, 700 KB

english, 2014

13

Development and Validation of a Novel TP53 Mutation Signature That Predicts Risk of Metastasis in Primary Prostate Cancer

Chipidza, Fallon E., Alshalalfa, Mohammed, Mahal, Brandon A., Karnes, R. Jeffrey, Liu, Yang, Davicioni, Elai, Martin, Neil E., Mouw, Kent W., Feng, Felix Y., Nguyen, Paul L., Muralidhar, Vinayak

Journal:

Clinical Genitourinary Cancer

Year:

2020

File:

PDF, 2.13 MB

2020

14

[IEEE 2008 8th IEEE International Conference on Bioinformatics and BioEngineering (BIBE) - Athens, Greece (2008.10.8-2008.10.10)] 2008 8th IEEE International Conference on BioInformatics and BioEngineering - Combining singular value decomposition and t-test into hybrid approach for significant gene extraction from microarray data

Alshalalfa, Mohammed, Alhajj, Reda, Rokne, Jon

Year:

2008

Language:

english

File:

PDF, 2.13 MB

english, 2008

15

[IEEE 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB 2008) - Sun Valley, ID, USA (2008.09.15-2008.09.17)] 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology - Combining multiple types of biological data in constraint-based learning of gene regulatory networks

Tan, Mehmet, AlShalalfa, Mohammed, Alhajj, Reda, Polat, Faruk

Year:

2008

Language:

english

File:

PDF, 703 KB

english, 2008

16

The long noncoding RNA landscape of neuroendocrine prostate cancer and its clinical implications

Ramnarine, Varune Rohan, Alshalalfa, Mohammed, Mo, Fan, Nabavi, Noushin, Erho, Nicholas, Takhar, Mandeep, Shukin, Robert, Brahmbhatt, Sonal, Gawronski, Alexander, Kobelev, Maxim, Nouri, Mannan, Lin, D

Journal:

Year:

2018

Language:

english

File:

PDF, 1.01 MB

english, 2018

17

Characterization of Transcriptomic signature of primary prostate cancer analogous to prostatic small cell neuroendocrine carcinoma

Alshalalfa, Mohammed, Liu, Yang, Wyatt, Alexander W., Gibb, Ewan A., Tsai, Harrison K., Erho, Nicholas, Lehrer, Jonathan, Takhar, Mandeep, Ramnarine, Varune R., Collins, Colin C., Den, Robert B., Scha

Journal:

International Journal of Cancer

Year:

2019

Language:

english

File:

PDF, 2.10 MB

english, 2019

18

Fuzzy clustering-based discretization for gene expression classification

Keivan Kianmehr, Mohammed Alshalalfa, Reda Alhajj

Journal:

Knowledge and Information Systems

Year:

2010

Language:

english

File:

PDF, 511 KB

english, 2010

19

Protein network-based Lasso regression model for the construction of disease-miRNA functional interactions

Ala Qabaja, Mohammed Alshalalfa…

Journal:

EURASIP Journal on Bioinformatics and Systems Biology

Year:

2013

Language:

english

File:

PDF, 1.22 MB

english, 2013

20

Interrogation of ERG gene rearrangements in prostate cancer identifies a prognostic 10-gene signature with relevant implication to patients' clinical outcome

Bismar, Tarek A., Alshalalfa, Mohammed, Petersen, Lars F., Teng, Liang Hong, Gerke, Travis, Bakkar, Ashraf, Al-Mami, Amal, Liu, Shuhong, Dolph, Michael, Mucci, Lorelei A., Alhajj, Reda

Journal:

BJU International

Year:

2014

Language:

english

File:

PDF, 1.14 MB

english, 2014

21

Doublecortin expression in prostate adenocarcinoma and neuroendocrine tumors

Tabrizi, Shervin, Alshalalfa, Mohammed, Mahal, Brandon A., Davicioni, Elai, Liu, Yang, Mouw, Kent W., Feng, Felix, Nguyen, Paul L., Muralidhar, Vinayak

Journal:

International Journal of Radiation Oncology*Biology*Physics

Year:

2020

File:

PDF, 2.17 MB

2020

22

A MYC and RAS co-activation signature in localized prostate cancer drives bone metastasis and castration resistance

Arriaga, Juan M., Panja, Sukanya, Alshalalfa, Mohammed, Zhao, Junfei, Zou, Min, Giacobbe, Arianna, Madubata, Chioma J., Kim, Jaime Yeji, Rodriguez, Antonio, Coleman, Ilsa, Virk, Renu K., Hibshoosh, Ha

Journal:

Year:

2020

File:

PDF, 16.05 MB

2020

23

Revealing miRNA Regulation and miRNA Target Prediction Using Constraint-Based Learning

Alshalalfa, Mohammed, Tan, Mehmet, Naji, Ghada, Alhajj, Reda, Polat, Faruk, Rokne, Jon

Journal:

IEEE Transactions on Systems Man and Cybernetics Part C (Applications and Reviews)

Year:

2012

Language:

english

File:

PDF, 549 KB

english, 2012

24

Detecting Cancer Outlier Genes with Potential Rearrangement Using Gene Expression Data and Biological Networks

Alshalalfa, Mohammed, Bismar, Tarek A., Alhajj, Reda

Journal:

Advances in Bioinformatics

Year:

2012

Language:

english

File:

PDF, 3.06 MB

english, 2012

25

Racial Differences in Genomic Profiling of Prostate Cancer

Mahal, Brandon A., Alshalalfa, Mohammed, Kensler, Kevin H., Chowdhury-Paulino, Ilkania, Kantoff, Philip, Mucci, Lorelei A., Schaeffer, Edward M., Spratt, Daniel, Yamoah, Kosj, Nguyen, Paul L., Rebbeck

Journal:

New England Journal of Medicine

Year:

2020

File:

PDF, 382 KB

2020

26

Using context-specific effect of miRNAs to identify functional associations between miRNAs and gene signatures

Alshalalfa, Mohammed, Alhajj, Reda

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 1.34 MB

english, 2013

27

MP39-09 A COMBINATION OF GENOMIC MARKERS AND CLINICAL VARIABLES PROVIDES SUPERIOR PROGNOSTIC PERFORMANCE IN HIGH-RISK BLADDER CANCER FOLLOWING CYSTECTOMY

Mitra, Anirban P., Lam, Lucia L., Ghadessi, Mercedeh, Erho, Nicholas, Vergara, Ismael A., Alshalalfa, Mohammed, Haddad, Zaid, Sierocinski, Thomas, Triche, Timothy J., Skinner, Eila C., Davicioni, Elai

Journal:

The Journal of Urology

Year:

2014

Language:

english

File:

PDF, 127 KB

english, 2014

28

[IEEE 2009 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Washington, D.C., USA (2009.11.1-2009.11.4)] 2009 IEEE International Conference on Bioinformatics and Biomedicine - Multiagent Approach for Identifying Cancer Biomarkers

Qabaja, Ala, Alshalalfa, Mohammed, Alhajj, Reda, Rokne, Jon

Year:

2009

Language:

english

File:

PDF, 290 KB

english, 2009

29

Transcriptome evaluation of the relation between body mass index and prostate cancer outcomes

Kim, Hyun, Kalchman, Ingrid, Santiago-Jiménez, María, Lehrer, Jonathan, Guo, Jenny, Hermann, Gretchen, Yamoah, Kosj, Alshalalfa, Mohammed, Huang, Huei-Chung, Ross, Ashley E., Schaeffer, Edward M., Dav

Journal:

Year:

2017

Language:

english

File:

PDF, 529 KB

english, 2017

30

TOP2A and EZH2 provide early detection of an aggressive prostate cancer subgroup

Labbé, David P, Sweeney, Christopher J., Brown, Myles, Galbo, Phillip, Rosario, Spencer, Wadosky, Kristine M, Ku, Sheng-Yu, Sjöström, Martin, Alshalalfa, Mohammed, Erho, Nicholas, Davicioni, Elai, Kar

Journal:

Clinical Cancer Research

Year:

2017

Language:

english

File:

PDF, 19.09 MB

english, 2017

31

Development and validation of a prostate cancer genomic signature that predicts early ADT treatment response following radical prostatectomy

Karnes, R. Jeffrey, Sharma, Vidit, Choeurng, Voleak, Al-deen Ashab, Hussam, Erho, Nicholas G, Alshalalfa, Mohammed, Trock, Bruce J., Ross, Ashley E., Yousefi, Kasra, Tsai, Harrison K, Zhao, Shuang G.,

Journal:

Clinical Cancer Research

Year:

2018

Language:

english

File:

PDF, 2.66 MB

english, 2018

32

Detecting microRNAs of high influence on protein functional interaction networks: a prostate cancer case study

Mohammed Alshalalfa, Gary D Bader, Anna Goldenberg, Quaid Morris, Reda Alhajj

Journal:

BMC Systems Biology

Year:

2012

Language:

english

File:

PDF, 1.08 MB

english, 2012

33

Ankyrin G expression is associated with androgen receptor stability, invasiveness, and lethal outcome in prostate cancer patients

Wang, Tingting, Abou-Ouf, Hatem, Hegazy, Samar A., Alshalalfa, Mohammed, Stoletov, Konstantin, Lewis, John, Donnelly, Bryan, Bismar, Tarek A.

Journal:

Journal of Molecular Medicine

Year:

2016

Language:

english

File:

PDF, 2.91 MB

english, 2016

34

MicroRNA Response Elements-Mediated miRNA-miRNA Interactions in Prostate Cancer

Alshalalfa, Mohammed

Journal:

Advances in Bioinformatics

Year:

2012

Language:

english

File:

PDF, 3.39 MB

english, 2012

35

Efficient Periodicity Mining in Time Series Databases Using Suffix Trees

Rasheeed, Faraz, Alshalalfa, Mohammed, Alhajj, Reda

Journal:

IEEE Transactions on Knowledge and Data Engineering

Year:

2010

Language:

english

File:

PDF, 619 KB

english, 2010

36

Racial Variations in Prostate Cancer Molecular Subtypes and Androgen Receptor Signaling Reflect Anatomic Tumor Location

Faisal, Farzana A., Sundi, Debasish, Tosoian, Jeffrey J., Choeurng, Voleak, Alshalalfa, Mohammed, Ross, Ashley E., Klein, Eric, Den, Robert, Dicker, Adam, Erho, Nicholas, Davicioni, Elai, Lotan, Tamar

Journal:

European Urology

Year:

2015

Language:

english

File:

PDF, 832 KB

english, 2015

37

MP07-03 PRIMARY TUMOR ANDROGEN RECEPTOR SIGNALING AS A PREDICTOR OF CASTRATE RESISTANCE

Ross, Ashley, Shinder, Brian, Tosoian, Jeffrey, Erho, Nicholas, Alshalalfa, Mohammed, Yousefi, Kasra, Hurley, Paula, Davicioni, Elai, Feng, Felix, Tran, Phuoc, Schaeffer, Edward

Journal:

The Journal of Urology

Year:

2016

Language:

english

File:

PDF, 296 KB

english, 2016

38

Validation of a 10-gene molecular signature for predicting biochemical recurrence and clinical metastasis in localized prostate cancer

Abou-Ouf, Hatem, Alshalalfa, Mohammed, Takhar, Mandeep, Erho, Nicholas, Donnelly, Bryan, Davicioni, Elai, Karnes, R. Jeffrey, Bismar, Tarek A.

Journal:

Journal of Cancer Research and Clinical Oncology

Year:

2018

Language:

english

File:

PDF, 1.64 MB

english, 2018

39

Multiparametric Magnetic Resonance Imaging Features Identify Aggressive Prostate Cancer at the Phenotypic and Transcriptomic Level

Beksac, Alp Tuna, Cumarasamy, Shivaram, Falagario, Ugo, Xu, Paige, Takhar, Mandeep, Alshalalfa, Mohamed, Gupta, Akriti, Prasad, Sonya, Martini, Alberto, Thulasidass, Hari, Rai, Richa, Berger, Mark, He

Journal:

The Journal of Urology

Year:

2018

Language:

english

File:

PDF, 3.40 MB

english, 2018

40

MP58-19 A GENOMIC CLASSIFIER FOR IDENTIFYING A NEUROENDOCRINE-LIKE BLADDER CANCER SUBTYPE

Lotan, Yair, Wright, Jonathan, Dall'Era, Marc A, Bivalacqua, Trinity, Seiler, Roland, Liu, Yang, Gibb, Ewan, Wang, Qiqi, Erho, Nicholas, Alshalalfa, Mohammed, Davicioni, Elai, Efstathiou, Jason A, Dou

Journal:

The Journal of Urology

Year:

2018

Language:

english

File:

PDF, 38 KB

english, 2018

41

Molecular characterization of neuroendocrine-like bladder cancer

Batista da Costa, José, Gibb, Ewan A, Bivalacqua, Trinity J., Liu, Yang, Oo, Htoo Zarni, Miyamoto, David T., Alshalalfa, Mohammed, Davicioni, Elai, Wright, Jonathan L., Dall'Era, Marc, Douglas, James,

Journal:

Clinical Cancer Research

Year:

2019

Language:

english

File:

PDF, 5.17 MB

english, 2019

42

Comprehensive Determination of Prostate Tumor ETS Gene Status in Clinical Samples Using the CLIA Decipher Assay

Torres, Alba, Alshalalfa, Mohammed, Tomlins, Scott A., Erho, Nicholas, Gibb, Ewan A., Chelliserry, Jijumon, Lim, Lony, Lam, Lucia L.C., Faraj, Sheila F., Bezerra, Stephania M., Davicioni, Elai, Yousef

Journal:

The Journal of Molecular Diagnostics

Year:

2017

Language:

english

File:

PDF, 2.17 MB

english, 2017

43

Cysteine- rich secretory protein 3 (CRISP3), ERG and PTEN define a molecular subtype of prostate cancer with implication to patients’ prognosis

Al Bashir, Samir, Alshalalfa, Mohammed, Hegazy, Samar A, Dolph, Michael, Donnelly, Bryan, Bismar, Tarek A

Journal:

Journal of Hematology & Oncology

Year:

2014

Language:

english

File:

PDF, 761 KB

english, 2014

44

microRNA 338-3p exhibits tumor suppressor role and its down-regulation is associated with adverse clinical outcome in prostate cancer patients

Bakkar, Ashraf, Alshalalfa, Mohammed, Petersen, Lars F., Abou-Ouf, Hatem, Al-Mami, Amal, Hegazy, Samar A., Feng, Felix, Alhajj, Reda, Bijian, Krikor, Alaoui-Jamali, Moulay A., Bismar, Tarek A.

Journal:

Molecular Biology Reports

Year:

2016

Language:

english

File:

PDF, 1.09 MB

english, 2016

45

MP6-09 MOLECULAR AND CLINICAL CHARACTERIZATION OF 1,577 PRIMARY PROSTATE CANCER TUMORS REVEALS NOVEL CLINICAL AND BIOLOGICAL INSIGHTS INTO ITS SUBTYPES

Tomlins, Scott, Alshalalfa, Mohammed, Erho, Nicholas, Yousefi, Kasra, Zhao, Shuang, den, robert, dicker, adam, trock, bruce, Demarzo, Angelo, Ross, Ashley, Schaeffer, Edward, Klein, Erick, Magi-Galluz

Journal:

The Journal of Urology

Year:

2015

Language:

english

File:

PDF, 41 KB

english, 2015

46

SPINK1 defines a molecular subtype of prostate cancer in men with more rapid progression in an at-risk, natural history radical prostatectomy cohort

Johnson, Michael H., Ross, Ashley E., Alshalalfa, Mohammed, Erho, Nicholas, Yousefi, Kasra, Glavaris, Stephanie, Fedor, Helen, Han, Misop, Faraj, Sheila F., Bezerra, Stephania M., Netto, George, Parti

Journal:

The Journal of Urology

Year:

2016

Language:

english

File:

PDF, 1003 KB

english, 2016

47

Associations of Luminal and Basal Subtyping of Prostate Cancer With Prognosis and Response to Androgen Deprivation Therapy

Zhao, Shuang G., Chang, S. Laura, Erho, Nicholas, Yu, Menggang, Lehrer, Jonathan, Alshalalfa, Mohammed, Speers, Corey, Cooperberg, Matthew R., Kim, Won, Ryan, Charles J., Den, Robert B., Freedland, St

Journal:

Year:

2017

Language:

english

File:

PDF, 1.88 MB

english, 2017

48

Low PCA3 expression is a marker of poor differentiation in localized prostate tumors: exploratory analysis from 12,076 patients

Alshalalfa, Mohammed, Verhaegh, Gerald W., Gibb, Ewan A., Santiago-Jiménez, Maria, Erho, Nicholas, Jordan, Jennifer, Yousefi, Kasra, Lam, Lucia L.C., Kolisnik, Tyler, Chelissery, Jijumon, Seiler, Rola

Journal:

Year:

2017

Language:

english

File:

PDF, 3.56 MB

english, 2017

49

ADAPTIVE MACHINE LEARNING TECHNIQUE FOR PERIODICITY DETECTION IN BIOLOGICAL SEQUENCES

RASHEED, FARAZ, ALSHALALFA, MOHAMMED, ALHAJJ, REDA

Journal:

International Journal of Neural Systems

Year:

2009

Language:

english

File:

PDF, 326 KB

english, 2009

50

Multi-institutional Analysis Shows that Low PCAT-14 Expression Associates with Poor Outcomes in Prostate Cancer

White, Nicole M., Zhao, Shuang G., Zhang, Jin, Rozycki, Emily B., Dang, Ha X., McFadden, Sandra D., Eteleeb, Abdallah M., Alshalalfa, Mohammed, Vergara, Ismael A., Erho, Nicholas, Arbeit, Jeffrey M.,

Journal:

European Urology

Year:

2016

Language:

english

File:

PDF, 1.42 MB

english, 2016

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